Основные публикации А.Г. Витрещака по тематике Лаборатории 6 c 2000 года

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  1. Vitreschak A.G., Gelfand M.S. Comparative approach to analysis of regulation in complete genomes: Attenuators of aromatic amino acid operons of gamma-proteobacteria. II Международная конференции "Проблемы управления и моделирования в сложных системах", Самара, Издательство РАН, 2000, p. 141-142.
  2. Panina E.M., Vitreschak A.G., Mironov A.A., Gelfand M.S. Regulation of aromatic amino acid biosynthesis in gamma-proteobacteria. Journal of molecular microbiology and biotechnology, vol. 3, No 4, 2001, p. 529-543.
  3. Витрещак А.Г., Гельфанд М.С. Предсказание вторичной структуры РНК. Программа rnapattern – поиск вторичной структуры по паттерну. Труды 3-й международной конференции «Проблемы управления и моделирования в сложных системах», Самара, РАН, 2001, с. 623–625.
  4. Vitreschak A.G. Computer analysis of regulation of genes, encoding aminoacyl-tRNA synthetases and amino acid biosynthetic proteins in gram positive bacteria: t-box RNA regulatory element. prediction of regulation of new genes, including amino acid transporters. In the abstracts of international school "Artifical intelligence and heuristic methods for bioinformatics", Italy, San-miniato, October 1-11, 2001, p. 63.
  5. Gelfand M.S., Laikova O., Mironov A.A., Novichkov P.S., Panina E.M., Rodionov D.A., Vitreschak A.G. Comparative analysis of bacterial patterns. In the abstracts of meeting of HHMI international research scholars, Vancouver, Canada, June 20-23, 2001, p. 75.
  6. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Research. 2002. V. 30. No 14. P. 3141-3151.
  7. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative Genomics of Thiamin Biosynthesis in Procaryotes. New Genes and Regulatory Mechanisms. J. Biol. Chem. 2002 Dec 13. V. 277. No 50. P. 48949-48959.
  8. Panina E.M, Vitreschak A.G., Mironov A.A., Gelfand M.S. Bioinformatics approach to analysis of regulation of aromatic amino acids biosynthesis in Bacillus/Clostridium group. Proceedings of the third International Conference on Bioinformatics of Genome Regulation and Structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 2, p. 32-34.
  9. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of bacterial riboflavin genes by a conserved RNA structural element. Proceedings of the third International Conference on Bioinformatics of Genome Regulation and Structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002. v. 2,. p. 44-46.
  10. Vitreschak A.G., Panina E.M., Rodionov D.A., Mironov A.A., Gelfand M.S. Comparative analysis of RNA regulation in bacterial genomes. 2002. Proc. Meeting of howard hughes medical institute international research scholars, palm cove, Australia, June 2002. p. 89.
  11. Vitreschak A.G. Computer analysis of regulation of genes encoding aminoacyl-trna synthetases and amino acid biosynthetic proteins in gram-positive bacteria: t-box RNA regulatory element. Prediction of regulation of new genes including amino acid transporters. Proc. Int. Summer school “from genome to life”. Structural, functional and evolutionary approaches, Cargese, Corsica, France, July 2002. p. 57-58.
  12. Витрещак А.Г. Компьютерное предсказание регуляторных сайтов мРНК. Анализ регуляции экспрессии генов биосинтеза аминокислот и генов, кодирующих тРНК-синтетазы в грамм-положительных бактериях. Информационные процессы, 2002, Т. 2, No 1, c. 91-95.
  13. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of the vitamin B(12) metabolism and transport in bacteria by a conserved RNA structural element. RNA. 2003 Sep. V. 9, No. 9, p. 1084-1097.
  14. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch? Nucleic Acids Research. 2003. V. 31. No. 23. P. 1-10.
  15. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes. J. Biol. Chem. 2003 Oct 17. V. 278. No. 42. P. 41148-41159.
  16. Panina E.M., Vitreschak A.G., Mironov A.A., Gelfand M.S. Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria. FEMS Microbiol Lett. 2003 May 28. V. 222. No. 2. P. 211-220.
  17. Zhang Z., Feige J.N., Chang A.B., Anderson I.J., Brodianski V.M., Vitreschak A.G., Gelfand M.S., Saier M.H.Jr. A transporter of Escherichia coli specific for l- and d-methionine is the prototype for a new family within the ABC superfamily. Arch. Microbiol. 2003 Aug. V. 180. No. 2. P. 88-100.
  18. Vitreschak A.G. Identification of RNA 5’ UTR regulatory elements and prediction of RNA riboswitch mechanism of regulation of vitamin biosynthetic and transport genes in bacteria. Proceedings of the International Moscow Conference on Computational Molecular Biology, MCCMB’03, Moscow, Russia, July 22-25, 2003. P. 233.
  19. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Research. 2002. V. 30. No 14. P. 3141-3151.
  20. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative Genomics of Thiamin Biosynthesis in Procaryotes. New Genes and Regulatory Mechanisms. J. Biol. Chem. 2002 Dec 13. V. 277. No 50. P. 48949 - 48959.
  21. Vitreschak A.G., Lyubetskaya E.V., Shirshin M.A., Gelfand M.S., Lyubetsky V.A. Attenuation regulation of amino acid biosynthetic operons in proteobacteria: comparative genomics analysis. FEMS Microbiol Lett. 2004 May 15; 234(2), p. 357-370.
  22. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative genomics of the regulation of methionine metabolism in Gram-positive bacteria. Nucleic Acids Res. 2004. V. 32. No. 11. P. 3340-3353.
  23. Vitreschak, A., Noe L., Kucherov G. Computer analysis of multiple repeats in bacteria. Proceedings of the fourth International Conference on Bionnformatics of Genome Regulation and Structure, BGRS’2004, Novosibirsk, Russia, July 25-30, 2004, V. 2. P. 297-299.

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