Основные публикации А.А. Миронова по тематике Лаборатории 6 c 1999 года

Вернуться

  1. Gelfand M.S., Mironov A.A., Jomantas J., Kozlov Yu.I. and Perumov D.A. A conserved RNA structure element involved in the regulation of bacterial riboflavin biosynthesis genes. Trends Genet., 15, 1999, p.p. 439-442.
  2. Новичков П.С., Гельфанд М.С., Миронов А.А. Предсказание экзон-интронной структуры сравнением геномных последовательностей. Молекулярная биология, т. 34, № 2, 2000, с. 230-236.
  3. Панина Е.М., Миронов А.А., Гельфанд М.С. Статистический анализ полных бактериальных геномов: палиндромы и системы рестрикции-модификации. Молекулярная биология, т. 34, № 2, 2000, с. 246-252.
  4. Миронов А.А., Винокурова Н.П., Гельфанд М.С. Программное обеспечение анализа бактериальных геномов. Молекулярная биология, т. 34, № 2, 2000, с. 253-262.
  5. Gelfand M.S., Koonin E.V., Mironov A.A. Prediction of transcription regulatory sites in Archaea by a comparative-genomic approach. Nucleic Acids Res., vol. 28, no. 3, 2000, p. 695-705.
  6. Mironov A.A, Novichkov P.S., Gelfand M.S. Pro-frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. Bioinformatics, vol. 17, No 1, 2001, p. 13-15.
  7. Rodionov D.A., Gelfand M.S., Mironov A.A., Rakhmaninova A.B. Comparative approach to analysis of regulation in complete genomes: multidrug resistance systems in gamma-proteobacteria. Journal of molecular microbiology and biotechnology, vol. 3, No 2, 2001, p. 319-324.
  8. Makarova K.S., Mironov A.A., Gelfand M.S. Conservation of the arginine repressor DNA binding signal in all bacterial lineages. Genome biology, vol. 2, No 4, 2001, pp. research0013.1-0013.8.
  9. Panina E.M., Vitreschak A.G., Mironov A.A., Gelfand M.S. Regulation of aromatic amino acid biosynthesis in gamma-proteobacteria. Journal of molecular microbiology and biotechnology, vol. 3, No 4, 2001, p. 529-543.
  10. Боринская С.А., Гельфанд М.С., Миронов А.А. Компьютерная геномика: в поисках генов. Химия и жизнь, No 2, 2001, с. 36-40.
  11. Gelfand M.S., Laikova O., Mironov A.A., Novichkov P.S., Panina E.M., Rodionov D.A., Vitreschak A.G. Comparative analysis of bacterial patterns. In the abstracts of meeting of HHMI international research scholars, Vancouver, Canada, June 20-23, 2001, p. 75.
  12. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Research. 2002. V. 30. No 14. P. 3141-3151.
  13. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative Genomics of Thiamin Biosynthesis in Procaryotes. New Genes and Regulatory Mechanisms. J. Biol. Chem. 2002 Dec 13. V. 277. No 50. P. 48949-48959.
  14. Panina E.M, Vitreschak A.G., Mironov A.A., Gelfand M.S. Bioinformatics approach to analysis of regulation of aromatic amino acids biosynthesis in Bacillus/Clostridium group. Proceedings of the third International Conference on Bioinformatics of Genome Regulation and Structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 2, p. 32-34.
  15. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of bacterial riboflavin genes by a conserved RNA structural element. Proceedings of the third International Conference on Bioinformatics of Genome Regulation and Structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002. v. 2,. p. 44-46.
  16. Permina E.A., Mironov A.A, Gelfand M.S. Damage-repair error-prone polymerase of bacteria: association with mobile genome elements. Gene. 2002. V. 293. No 1-2. P. 133-140.
  17. Baytalulk M.V., Gelfand M.S., Mironov A.A. Exact mapping of prokaryotic gene starts. Briefings in bioinformatics. 2002. V. 3. No 2. P. 181-194.
  18. Байталюк М.В., Гельфанд М.С., Миронов А.А. Сравнительный подход к уточнению начал генов в полных бактериальных геномах. Биофизика. 2002, Т. 47, № 2, c. 197-203.
  19. Равчеев Д.А., Гельфанд М.С, Миронов А.А., Рахманинова А.Б. Пуриновый регулон гамма-протеобактерий. Детальное описание. Генетика. 2002. Т. 38. № 9, c. 1203-1214.
  20. Rodionov D.A., Mironov A.A., Gelfand M.S. Conservation of the biotin regulon and the BIRA regulatory signal in eubacteria and archaea. Genome research. 2002. V. 12. No 10. P. 1507 - 1516.
  21. Нуртдинов Р.Н., Миронов А.А., Гельфанд М.С. Консервативен ли альтернативный сплайсинг генов млекопитающих? Биофизика. 2002. Т. 47. № 4. c. 197-203.
  22. Vitreschak A.G., Panina E.M., Rodionov D.A., Mironov A.A., Gelfand M.S. Comparative analysis of RNA regulation in bacterial genomes. 2002. Proc. Meeting of howard hughes medical institute international research scholars, palm cove, Australia, June 2002. p. 89.
  23. Nurtdinov R.N., Artamonova I.I., Mironov A.A., Gelfand M.S. Are patterns of alternative splicing of mammalian genes conserved? Proceedings of the third International Conference on Bioinformatics of Genome Regulation and Structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 3, p. 36-39.
  24. Novichkov P.S., Gelfand M.S., Mironov A.A. Mutation rate of ribosomal proteins and the 3d structure of the small ribosomal subunit. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 3, p. 174-176.
  25. Novichkov P.S., Gelfand M.S., Mironov A.A. Relative mutation rate of bacterial proteins and prediction of the distance between orthologous genes. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 3, p. 177-180.
  26. Gerasimova A.V., Rodionov D.A., Mironov A.A., Gelfand M.S. fnr/dnr/anr-regulon in gamma-proteobacteria. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 2, p. 19-20.
  27. Ravcheev D.A., Gelfand M.S., Mironov A.A., Rakhmaninova A.B. The purine regulon of gamma-proteobacteria. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 2, p. 38-39.
  28. Rodionov D.A., Mironov A.A., Gelfand M.S. Computational analysis of the biotin regulon in bacterial genomes. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia July 14-20, 2002, v. 2, p. 40-43.
  29. Favorov A., Gelfand M.S., Mironov A.A., Makeev V. Yu. Yet another digging for DNA motifs GIBBS sampler. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 1, p. 31-33.
  30. Baytaluk M.V., Gelfand M.S., Mironov A.A. Exact mapping of prokaryotic gene starts. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 1, p. 113-115.
  31. Neverov A.D., Gelfand M.S., Mironov A.A. Gene prediction in genomic DNA of aspergillus. Proceedings of the third international conference on bioinformatics of genome regulation and structure, BGRS’2002, Novosibirsk, Russia, July 14-20, 2002, v. 1, p. 116-118.
  32. Горбунов К.Ю., Миронов А.А., Любецкий В.А. Поиск консервативной вторичной структуры РНК. Молекулярная биология, том 37, № 5, 2003, с. 850-860.
  33. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of the vitamin B(12) metabolism and transport in bacteria by a conserved RNA structural element. RNA. 2003 Sep. V. 9, No. 9, p. 1084-1097.
  34. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch? Nucleic Acids Research. 2003. V. 31. No. 23. P. 1-10.
  35. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes. J. Biol. Chem. 2003 Oct 17. V. 278. No. 42. P. 41148-41159.
  36. Panina E.M., Vitreschak A.G., Mironov A.A., Gelfand M.S. Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria. FEMS Microbiol Lett. 2003 May 28. V. 222. No. 2. P. 211-220.
  37. Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Research. 2002. V. 30. No 14. P. 3141-3151.
  38. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative Genomics of Thiamin Biosynthesis in Procaryotes. New Genes and Regulatory Mechanisms. J. Biol. Chem. 2002 Dec 13. V. 277. No 50. P. 48949 - 48959.
  39. Nurtdinov R.N., Artamonova I.I., Mironov A.A., Gelfand M.S. Low conservation of alternative splicing patterns in the human and mouse genomes. Hum. Mol. Genet. 2003. V. 12. No 11. P. 1313-1320.
  40. Panina E.M., Mironov A.A., Gelfand M.S. Comparative genomics of bacterial zinc regulons: Enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins. PNAS. 2003. V. 100. No 17. P. 9912-9917.
  41. Gelfand M.S., Nurtdinov R.N., Kriventseva E.V., Artamonova I.I., Ramensky V.E., Mironov A.A., Sunyaev S.R. Evolutionary and functional role of alternative splicing. 1st Int. Con. «Functional Genomics and Disease», Prague, May 2003, poster PT4/181.
  42. Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. Comparative genomics of the regulation of methionine metabolism in Gram-positive bacteria. Nucleic Acids Res. 2004. V. 32. No. 11. P. 3340-3353.

Вернуться